Results from EBioScience web retrieved at 15:41 (GMT)
Vacancies in the e BioScience Group The e bioscience group is part of the laboratory of the AMC, which is headed by Prof. Dr. Antoine van Kampen. In our group we do ...
BLAST on the e BioinfraGateway Go back to e BioinfraGateway user documentation Video Supported Input Data Sample Input Data You may download and use the following ...
MatthanCaan 2012 04 06 DTI BedpostX processing for probabilistic tractography Go back to e BioinfraGateway user documentation Introduction BedpostX is part of the ...
Classification for Omics Data Application R 2.13.0 libraries for windows All libraries in file : R 2.13.0 library CL Desktop.zip should be extracted in the directory ...
Closing Workshop of the VL e Medical Project The closing workshop of the Medical Diagnosis and Imaging (VL e Medical) subprogram of took place at the http://www ...
Contact Us! If you wish more information about the research activities of the e bioscience group or to get access to the e BioInfra, please contact us: Bioinformatics ...
Creating Gwendia workflows This page is a collection of common practice (tips and tricks) to creat workflows that run on the EBioInfra. Useful hints The word ...
DTI Atlas on the e BioinfraGateway Go back to e BioinfraGateway user documentation Video Data Preparation You need to inspect the output data of the DTI Preprocessing ...
MatthanCaan 2012 02 23 DTI Population Registration To do DARTELRegDTI S0 run this matlab binary multi threaded? How many? Should application control no. ...
Visit Dario Bijker 2 Februari 2012 Beroepsorientatiedag VWO @ AMC Mensen: Antoine van Kampen Evert Mouw Paul Groot Andrel Linnenbank 11:45 ...
Data Management on the Grid Grid jobs need to access files located remotely. These files can be sent from the workstation to the job and back every time using a mechanism ...
Documentation This is an unsorted list of handy links and documentation (under construction). Please give us feedback or contribute by editing these pages directly ...
eBioCrawler Introduction: The eBioCrawler is composed of a java based agent that screens the logs files, classifies and links the data, and stores it into the data ...
e BioInfrastructure (e BioInfra) The e BioScience Infrastructure (e BioInfra) was initially developed for medical image analysis applications as part of the Medical ...
e BioInfra Advanced Page Here you find more detailed information about the e BioInfra software and services (see fig). Grid and Middleware Services Starting from ...
AMC e BioInfra Gateway (Liferay based) DRAFT Introduction The AMC e BioInfra Gateway is a web portal based on Liferay technology. It facilitates access to the ...
e BioinfraGateway The e Bioinfra Gateway (e BioinfraGateway) is a web application that provides facilitated access to the Grid infrastructure for researchers that ...
Loading... e bioinfragateway e bioinfragateway user documentation
From executable to workflow Introduction There are several ways to transcribe a unix command line executable (bash, perl, java,.. ) into a workflow that can be executed ...
Freesurfer on the e BioinfraGateway Go back to e BioinfraGateway user documentation Video Supported Data Format The input data can be in either dicom format or nifti ...
GASW The Application Service Wrapper is part of MOTEUR, a workflow management system. GASW is used to automatically wrap non interactive command line linux applications ...
General Description
General Executor Motivation It would be helpful for some researchers to send an executable with the input data to the grid, and specify the command needed to be performed ...
Genome Compare on the e BioinfraGateway Go back to e BioinfraGateway user documentation Introduction This application counts and clusters homologous genes to find ...
Getting Started on the e BioInfra NOTE: we recommend to follow the complete guide from one single computer using the default configurations. This will make prevent ...
Creating graphics with R on the grid R is a language and environment for statistical computing and graphics. However, if you want to create graphics with R on the ...
conference, Amsterdam 2012
Information about HealthGrid.eu website HealthGrid Conference 2010, ? Previous 2009, (Germany) 2008, (USA) 2007, (Switzerland) 2006, (Spain) 2005, (UK) 2004, 2003 ...
This page is under construction.
Loading...
Job Monitoring (This page is under construction.) In this context, Job Monitoring is the act of monitoring the status of jobs submitted by MOTEUR. This can be done ...
Linkage Analysis Project Intro Genome wide study: 620 000 SNPS, 400 persons, 8 generations, 1 family sodium channel disease, founder mutation, ECG used ...
MOTEUR What is MOTEUR MOTEUR is a workflow management system developed by the Team, in particular Glatard and Montagnat. For more information check: How to get ...
Jobs or Workflow Components in matlab TODO: update mcr version number, 64 bits and make doc consistent in the documentation It is possible to run matlab programs ...
Meeting about Provenance Motivation At the AMC the e BioInfra provides services and support to facilitate the analysis of large or complex data on the Dutch Grid ...
MOTEUR: Advanced Page This page is intended for advanced users and developers of the e BioInfra. Please read the MOTEUR page first. Details of workflow execution ...
e BioScience News April 27, 2012 BiG Grid has agreed to fund the Bioinformatics Laboratory at the AMC to continue the development and support of the eBioInfra platform ...
Vacancy for Post Doctoral Fellow The Academic Medical Center (AMC) has an opening for apost doctoral fellowat the groupof the Laboratory, Department of Clinical Epidemiology ...
Parallel MMBE Goals In CT angiography (CTA) scans, the arteries are often obscured by bone. MMBE is a medical imaging algorithm and software for bone removal from ...
People e BioScience The core of the e bioscience team is composed of: Prof. Dr. Antoine van Kampen SilviaOlabarriaga Mark Santcroos Shayan Shahand ...
DTI Preprocessing on the e BioinfraGateway Go back to e BioinfraGateway user documentation Introduction This application preprocesses the MRI scans and prepare them ...
Previous members of the e BioScience Team Angela Luyf Daniel Weterbeek Yassene Mohammed Carsten Byrman Martin Stam Paul van Hooft ...
e BioScience Projects The activities of the e bioscience group are carried out through participation in various projects, which intersect and overlap at the e bioinfra ...
Research
sagasw Overview sagasw (Stand Alone Generic Application Service Wrapper) is a utility that wraps any (non interactive) command line program into a grid job so that ...
T B Cell Variation on the e BioinfraGateway Go back to e BioinfraGateway user documentation Description The alpha and beta chain of the T cell receptor and the B ...
Data from the 1000 genomes project Source data set Experiment data http://www.1000genomes.org/ Data set NA06984 (selected a random individual) Direct link ...
Tools Services Started Documentation Services Gateway, Documentation Workflow Dashboard: overview of workflows. Dashboard Python: overview ...
Some Useful Scripts Alternatieve WMS # Connect proxy with alternative wms service WMS https://wms.grid.sara.nl:7443/glite wms wmproxy server glite wms job delegate ...
VBrowser The Virtual Resource Browser (VBrowser) was designed and developed at the Informatics Institute of the University of Amsterdam by Piter de Boer in the VL ...
Vacancy for Grid Software Developer The Academic Medical Center (AMC) has an opening for a grid software developer at the e BioScience group of the Laboratory ...
Medical Bioinformatics and e Bioscience http://www.uva.nl Visit Daniel Farkas to the AMC Daniel Farkas visited the the e Bioscience group of the AMC in ...
Exchanging grid experiences with Groningen Agenda Thursday 21 October 2010 Time slot Responsible Subject 12:00 12:30 Carsten Lunch 12:30 13 ...
Visit Tamas Kiss to the AMC Dr. Tamas Kiss visited the e Bioscience group of the AMC in Amsterdam on February 2 3, 2011 for collaboration on Desktop Grid computing ...
Admin stuff Admin stuff
TWiki's nop EBioScience web The web for users, groups and offices. TWiki is an Enterprise Collaboration Platform.
.reg, .trade { font family:Arial,sans serif; / looks bad in default font / } .reg { padding:0px 2px; / improve typographics / } var gaJsHost (("https:" ...
e BioScience Web Menu About http://www.bioinformaticslaboratory.nl/twiki/bin/view/EBioScience/PeopleEBioScience People http://www ...
e BioScience at the AMC News Vacancies Who, Where and What? The e Bioscience group is part of the Laboratory of the Department of Clinical Epidemiology, Biostatistics ...
" warn "off"}%
SilviaOlabarriaga AngelaLuijf
nop EBioScience Web Preferences The following settings are web preferences of the EBioScience web. These preferences overwrite the site level preferences in ...
" else " nop TWiki's nop EBioScience web"}% /EBioScience The web for users, groups and offices. TWiki is an Enterprise Collaboration Platform.
Statistics for nop EBioScience Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic ...
Top Menu of nop EBioScience Web This topic defines the menu structure of the nop EBioScience web, used by the TopMenuSkin. e BioScience Information People ...
Workflow Repository Best Practices Overview Please follow the instructions on this page to compose and store your workflows in a more structured way, so other ...
Workflow Tutorial Step by step introduction to create workflows, and execute these workflows from the Vbrowser GUI with the MOTEUR plugin. Grid certificate Request ...
DTI workflows on EBioScience Documentation on processing of DTI data can be found on leBIC wiki (AMC only, outside AMC). Meeting 09 03 2012 (Paul, Shayan, Matthan ...
Number of topics: 74
See also the faster WebTopicList 
Topic revision: r5 - 2006-11-15 - TWikiContributor
Home 
Site map
BioLab web
People
e-BioInfra
General Description
Research output
Contact
Create New Topic
Index
Search
Changes
Statistics
Preferences
Account 
Copyright © 2008-2012 by the contributing authors. All material on this collaboration platform is the property of the contributing authors. Ideas, requests, problems regarding TWiki? Send feedback