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Aldo Jongejan Postdoc (AMC) Whole exome sequence analysis Room: nop J1B 205, Phone: 31 (0)20 5664711, Email: a.jongejan #64;amc.uva.nl General Info I studied ...
Bioinformatics Laboratory Medical Bioinformatics and e Bioscience Bioinformatics vacancies Scientific programmer BioExpert for the definition of ...
Upcoming AMC meetings KEBB Seminars Department of Clinical Epidemiology Biostatistics and Bioinformatics Location: B1 120 Tuesday 13.00 14.00 Schedule 2011 ...
Back to BioLabPeople A.C.M. Luyf (Angela) In the picture Bioinformatics Laboratory Department of Clinical Epidemiology, Biostatistics and Bioinformatics ...
Back to People Prof. dr. A.H.C. van Kampen (Antoine) In the picture Bioinformatics Laboratory Department of Clinical Epidemiology, Biostatistics and Bioinformatics ...
Barbera D.C. van Schaik Sequence analysis After studying analytical chemistry at the HLO in Alkmaar (1995 1999) I started my bioinformatics training at the AMC under ...
BioLab People Research Systems genomics e Bioscience Semantic Biosystems Data analysis Research output Software Databases Education Impressions Contact ...
Medical Bioinformatics and e Bioscience http://www.amc.nl
Bioinformatics Laboratory Medical Bioinformatics and e Bioscience http://www.amc.nl/?sid 1902 Department of Clinical Epidemiology, Biostatistics and Bioinformatics ...
Back to menu Bioinformatics and e Bioscience show cases This page contains lectures, publications, and/or other material that show how bioinformatics and e Bioscience ...
Book contributions Gerben J. Schaaf, Fred van Ruissen, Antoine van Kampen, Marcel Kool and Jan M. Ruijter (2007) Statistical Comparison of Two or More SAGE Libraries ...
Christin Christin
Back to menu Lezing Communicatie in de Biologie (Highlights Biomedische Wetenschappen) Vakcode 1003 Admin. code FDBA Studielast 4 ( EC) ...
Contact Bioinformatics Laboratory Clinical Epidemiology, Biostatistics and Bioinformatics Academic Medical Center Visiting address: Meibergdreef 9 J1B ...
DanielWesterbeek 2011 01 11 Dani l Westerbeek
Back to menu DNA technology course Exercises: http://www.bioinformaticslaboratory.nl/ Education DNA technology course Slides DNA technology bioinformatics ...
ECCB 2008 A. M. Willemsen, G. A. Jansen, J. C. Komen, S. van Hooff, H. R. Waterham, P. M. T. Brites, Ronald J. A. Wanders, Antoine H. C. van Kampen: Organization ...
Back to BioLab Home Back to EBioScience home e Bioscience People The amount and complexity of biomedical data available for research and healthcare ...
Back to menu e Bioscience in Medical Imaging People The e Bioscience research is led by Silvia Olabarriaga . .
to Blackboard Courses and training programmes Main teachers Medical Informatics (AMC) MIK1.2 Biomedische basis principes MIK2.1 Databases en computernetwerken ...
Back to menu Under construction
Back to menu Bioinformatics II: Analysis of genome wide expression data During this 4 week bioinformatics programme the participants acquire fundamental skills ...
Back to menu Bioinformatics II: Next Generation Sequencing. RNA Seq and Exome sequencing During this bioinformatics programme the participants acquire fundamental ...
Back to menu Course material Lecture: Part1 Part2 Exercises Information on R Bioconductor homepage R and its packages can be downloaded ...
Back to menu Course material Lecture Exercises image files for Exercise 3 (maQualityPlots) Data The Integrin beta7 dataset The Agilent ...
Back to menu Course material Lecture: Part1 Part2 Exercises Data Data for the exercises Literature Limma package: guide and definitions ...
Back to menu Course material Exercises affyPLM images of Exercise 4 HTML report of Exercise 8 Data Data for the exercises Background material ...
Back to menu Course material Lecture Exercises Data Data for the exercises Literature Primer on clustering Primer on principal component ...
Back to menu Course material Exercises Data Data for the computer exercises Literature Primer on neural networks Primer on support vector ...
Back to menu Course material Lecture Exercises Data Data for the exercises Literature Toxicogenomics of Subchronic Hexachlorobenzene Exposure ...
Back to menu Module 3 In this module you will apply what was learnt in the Bioconductor module (module 2) to a challenging microarray experiment from a recent ...
Biological databases and database searching As part of the exercises you will use a few (out of hundreds) available biological databases. These are often freely available ...
Back to menu Bioinformatics Vakcode BW02K Admin. code FDBA Studielast 12 ( EC) Ingangseis Deze cursus is alleen toegankelijk voor 3e jaars ...
Back to menu Exercises:DNA microarray analysis We will use the TIGR MultiExperiment Viewer (TMEV) Java software package for the analysis of microarray data. You ...
Back to menu AMC Graduate School: Introduction to Bioinformatics Schedule and registration Schedule via the AMC graduate school board UvA Introduction ...
Introduction to unix Material Introduction to Unix (pdf) Exercises sequence analysis (pdf)
Back to menu MIK DGO Bioinformatica Other teachers Studie: Medische Informatica (3de jaar Bachelor) Coordinator: Prof. Dr. Antoine van Kampen Bioinformatics ...
Back to menu Biomedische basisprincipes (MIK1.2) Studie: Medische Informatica (1ste jaar Bachelor) In dit college wordt een eerste introductie van de bioinformatica ...
Back to menu Databases en computernetwerken(MIK2.1) Studie: Medische Informatica (2de jaar Bachelor) In dit college staan de publieke biologische databases ...
Back to menu Current issues in medical informatics I Lecture on DNA microarrays, October 1st, 2010 (Perry Moerland): pdf
Back to menu MIK Bachelor Seminars 2011 Teachers Studie: Medische Informatica (3de jaar Bachelor) Coordinator: Prof. Dr. Antoine van Kampen Bioinformatics ...
Back to menu MIK Bachelor Seminars 2012: From DNA to Patient Care Teachers Module: Bachelor project medische informatiekunde (3de jaar bachelor MIK ...
Back to menu Optimisation Techniques in Bioinformatics and Systems Biology Part of the NBIC PhD school Lecturers: Dr. J.A. Kaandorp (Jaap; coordinator ...
Back to menu LET OP je zit nu op de pagina EducationXXX!!! Eerst EducationBioLab editten en de juiste topic (wikiword) bij jou deel van het onderwijs zetten ...
Back to People Bioinformatics Laboratory Department of Clinical Epidemiology, Biostatistics and Bioinformatics (KEBB) Academic Medical Center (AMC) Visiting address ...
Hi, I joined the bioinformatics lab at 2011 10 03. I will assume two roles: supporting others with using the grid / administering the server "orange" (20h) ...
Back to menu Genomics of Disease Studiegidsnummer 5052GEZ12Y Vakcode BW207 Admin. code FDBA Studielast 12 EC Studiejaar Jaar 2 bachelor ...
Back to People Dr. ir. G.A. Jansen (Gerbert) In the picture Bioinformatics Laboratory Department of Clinical Epidemiology, Biostatistics and Bioinformatics ...
Grid Dutchgrid Certification Authority (CA) If you need access to GRID applications (e.g., VLe) you need a certificate to authenticate (make your identity known ...
Back to People No longer with us: Dr. C. Christin (Christin) Metabolomics Januari 2011 Januari 2012 Current working address: ...
Amsterdam Impression A brief impression of the city of Amsterdam where we are located Canal Albert cuyp market A canal Amsterdam harbour Bikes in canal Street ...
AMC impression This page contains a few photos that give a first impression of the Academic Medical Centre (AMC). AMC terrain AMC building One of the many passages ...
Impressions Where do we live and where did we come from? Academic Medical Center Amsterdam .
Back to menu Information Management People The organisation, integration, presentation and application of the vast amounts of (public) omics data and biomedical ...
Information Overload Syndrome
Still empty AntoineVanKampen 2012 01 16
Kyriacos N. Neocleous Bio Kyriacos Neocleous was born in Nicosia, Cyprus. He obtained his M.Sc. in Computer Science from the University of Cyprus. Between March ...
Links The Netherlands and Amsterdam The Netherlands Amsterdam Hotels in Amsterdam University of Amsterdam( nop UvA) University of Amsterdam Faculty of Science ...
Mark Santcroos About Working with the title of Grid System Engineer in the e BioScience group of Silvia Delgado Olabarriaga. Contact Room: J1B 221 Phone ...
Back to menu Medical Molecular Systems Biology Vakcode 051 BMS Part of the master program MECICAL BIOLOGY / MEDICAL BIOCHEMISTRY The June part ...
Back to menu Metabolomics analysis People At this moment we are developing expertise and methods for the analysis of mass spectroscopy metabolomics data ...
/Mia30.jpg I obtained my Drs degree in Chemistry from the university of Utrecht, with a one year excursion to the Ecole Normale Superieure de Chimie de Montpellier ...
Back to menu Microarray analysis People We have large experience in experimental design and analysis of microarray experiments from various platforms ...
Back Seminar #4: e Infrastructures Practice IMPORTANT NOTICE When using the VBrowser, do not delete or copy any grid files that were not created by yourself ...
Back Exome sequencing in practice Document with computer exercises: document (docx) The links provided below can be used during the computer exercises ...
Back Variant selection and accounting for data bias Document with computer exercises: document (pdf) The links provided below can be used during ...
Virus discovery Mail your answers to the questions below to b.d.vanschaik #64;amc.uva.nl before February 4, 2012 Background Virus discovery or other metagenomics ...
Back to menu Miniscriptie (2de jaars studenten Bio medische Wetenschappen) Vakcode 290BMW) Studielast 6 ( EC) Studiejaar 2010 2011 Periode ...
M.D. Stobbe (Miranda) Short resume Master of science Utrecht University, August, 2006 Main subject: Biomdedical Image Sciences PhD student ...
People Vacancies BioLabTemplate AdminTemplate My activities AngelaLuijfSandbox
Back to menu e BioInfra Tutorial at the NBIC Conference: port applications to the grid and run them as part of a workflow Date: 19 April 2011 Location: Conference ...
Back to menu NBIC Advanded RNA seq Course Schedule Schedule Handouts Hoen introduction RNA Seq.pdf Hoen quality control.pdf Antoine van ...
News VLEMED Closing Workshop, 16 December 2009, AMC, Amsterdam ISNB 2010, april 22 23, Science Park Amsterdam, Amsterdam. Workshop on Challenges for the Application ...
to Antoine van Kampen Inaugural Lecture (oratie) Inaugural Lecture (Gebundelde Krachten) Antoine van Kampen May 20, 2011 Lutherse Kerk, Amsterdam ...
Other Reports Willem Bouten, Antoine van Kampen, Arnold Smeulders (2009) e Science research focus FNWI (pdf) Antoine van Kampen (2008) e Bioscience onderzoeksinfrastructuur ...
Research output Key publications Publications Book contributions Other to be added
Back to menu Pattern Recognition Visit the website for more detailed information and all course material. Part of the NBIC PhD school Lecturers: Dr ...
Current group members Head of the lab Prof. Dr. A.H.C. van Kampen (Antoine) Group leader Personal page Room: nop J1B 208, Phone: 31 (0)20 5667096 ...
Back to People Dr. ir. P.D. Moerland (Perry) In the picture Bioinformatics Laboratory Department of Clinical Epidemiology, Biostatistics and Bioinformatics ...
Places where we live and where we came from The people from the Bioinformatics Laboratory live in various cities and towns in the Netherlands. The photos below ...
Bioinformatics Laboratory Medical Bioinformatics and e Bioscience Presentations
Back to menu AMC Graduate School: Proteomics, mass spectrometry and protein research Lecture on database searching for proteomics data, November 30, 2010 (Perry ...
Back to menu Proteomics analysis People We have been involved in the experimental design and analysis of several SELDI TOF proteomics experiments. Typically ...
Publications 2011 Y. Mohammed, S. Shahand, V. Korkhov, A. Luyf, B. van Schaik, M. Caan, A. van Kampen , M. Palmblad, and S. Olabarriaga . Data Decomposition ...
Research description Research leaders The Bioinformatics Laboratory pursues three lines of research in areas important for the AMC. This research is generally ...
Back to menu Semantic Biosystems People The work in Semantic Biosystems works on the basis that well structured, accessible and integrated information is ...
Back to menu Sequence analysis People Over the past decade we have gained considerable experience with the analysis of nucleotide sequences. Currently, ...
Activities at e BioScience group Current COMMIT: front ends to biomedical dada analysis on e infrastructures SCI BUS: AMC application specific ...
Silvia Delgado Olabarriaga Bio Silvia D. Olabarriaga was born in Porto Alegre, Brazil. She graduated in Informatics at the Federal University of Rio Grande do ...
Software As part of research collaborations we developed several software applications, which are listed below. For some of these applications the source code is ...
Souley Madougou General info I am from Niger where I completed my elementary and secondary studies. I discovered the information technology (IT) in Morocco where ...
Back to menu Statistical Computing in R This course is part of the PhD course program of the Graduate School. Location: Academic Medical Center, Amsterdam ...
Back to menu Amsterdam International Medical Summer School The Amsterdam International Medical Summer School (AIMSS) is an annual event, which is organized by ...
Back to menu Exercises:DNA microarray analysis We will use the TIGR MultiExperiment Viewer (TMEV) Java software package for the analysis of microarray data. You ...
Data analysis Go directly to The Bioinformatics Laboratory participates in projects that require support for experimental design and the analysis of data from ...
Back to menu System Genomics People High throughput experimental methods in molecular biology provide the quantitative basis for gaining a better understanding ...
Back to menu Bioinformatics for Translational Medicine: exome sequencing Bioinformatics for Translational Medicine Master Bioinformatics and Systems Biology ...
Umesh Nandal PhD Student Bioinformatics Laboratory Department of Clinical Epidemiology, Biostatistics and Bioinformatics (KEBB) Academic Medical Center (AMC) Email ...
Vacancies No vacancies at this moment .
Vladimir Korkhov E Bioscience Group Bioinformatics Laboratory Department of Clinical Epidemiology, Biostatistics and Bioinformatics (KEBB) Academic Medical Center ...
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Workflows for Sequence Analysis on the Dutch Grid This page provides the source code and extra information about the workflows described in: Initial steps towards ...
Yassene Mohammed E Biosciecne GroupBioinformatics LaboratoryDepartment of Clinical Epidemiology, Biostatistics and Bioinformatics (KEBB)Academic Medical Center (AMC ...
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