Medical Bioinformatics and e-Bioscience

NBIC Advanded RNA-seq Course

Schedule

• Schedule

Handouts

• Hoen_introduction RNA-Seq.pdf
• Hoen_quality control.pdf
• Antoine van Kampen, Bias in RNA-Seq data (pptx)
• Zwet_statistical tests.pdf
• Hoen_introduction edgeR DESeq.pdf
• Willemsen_DEseq practicum.docx
• Westra_eQTL analysis.ppt
• Rustici_expression databases.ppt
• Brouwer_edgeR practicum.doc

Getting started

• Start Winscp and connect to amc-app1.amc.sara.nl
• Copy this file to your home directory on the server.
• Start Xming and putty (enable x11 forwarding).

Data

• De input data can be read (do not copy) from the home directory of stud00, e.g. > samtools view ~stud00/data/Marieke/bn1_chr10.bam > bn1_chr10.sam