Medical Bioinformatics and e-Bioscience
Back to menu
AMC Graduate School: Introduction to Bioinformatics
Schedule and registration
Schedule
Register via the AMC graduate school
Introduction to Bioinformatics
Teacher: prof. dr. Antoine van Kampen
Introduction to Bioinformatics (pptx)
Biological Databases
Teacher: prof. dr. Antoine van Kampen
Biological databases (pptx)
Computer exercises
.
Bioinformatics of sequencing
Teacher: Fred van Ruissen
Bioinformatics of sequencing (pdf)
Score matrices
Teacher: prof. dr. Antoine van Kampen
Scores (ppt)
. The basics of score matrices and their statistical evaluation.
Exercises Score Matrices (doc)
Teacher Notes Exercies (doc)
Exercise.xls
Exercise+Answers.xls
PAM_Exercise.xls
PAM_Exercise+Answers.xls
Generation of PAM matrices
Statistical analysis of transcript counts
Teacher: Dr. Jan Ruijter
Teacher notes and exercises (pdf)
Handouts (pdf)
Exercises_SAGEstatistics.xls
DNA microarray analysis
Teacher: Dr. ir. Perry Moerland
Lecture notes
and
slides
Computer exercises
Gene finding
Teacher: prof. dr. Antoine van Kampen
Gene finding (ppt)
Exercises (doc)
Exercise sequences
Sequence analysis
EMBOSS toolbox
Readseq
Blast 2 sequences
Gene finding programs
GeneMark
GLIMMER
BPROM
. Prediction of bacterial promotors
BPROM Documentation
Hemoglobin and Sickle cell disease
(Chime plugin required)
Genetic code
Sequence alignment and Blast
Teacher: Aldo Jongejan
Slides - sequence alignment (pdf)
Slides - Blast (pdf)
Slides - overview nextgen sequencing bioinformatics (pdf)
(not presented during course)
Exercises (pdf)
Solution exercises (pdf)
Phylogenetics
Teacher: prof. dr. Antoine van Kampen
Phylogenetics (pptx)
SNPs and genome-wide association
Teacher: Dr. ir. Perry Moerland
Slides
Pathways
Teacher: Miranda Stobbe
Pathways (ppt)
and
pdf
E
dit
|
A
ttach
|
P
rint version
|
H
istory
: r29
<
r28
<
r27
<
r26
<
r25
|
B
acklinks
|
R
aw View
|
WYSIWYG
|
M
ore topic actions
Topic revision: r29 - 2011-04-28 -
AngelaLuijf
Home
Site map
BioLab web
EBioScience web
ISNB web
Main web
Sandbox web
TWiki web
P
BioLab Information
People
Research:
Systems genomics
e-BioScience
Semantic Biosystem
Data analysis
Research output
Software & Databases
Education
Impressions
Contact
BioLab Web
Create New Topic
Index
Search
Changes
Statistics
Preferences
Account
Log In
E
dit
Copyright © 2008-2012 by the contributing authors. All material on this collaboration platform is the property of the contributing authors.
Ideas, requests, problems regarding TWiki?
Send feedback